CRISPRone

CRISPRone report for GCA_900144275.1_83

♦ Seq 1: FRHF01000062.1 Pseudomonas aeruginosa isolate 83 genome assembly, contig: 83.NODE_65_length_198439_cov_43.645004, whole genome shotgun sequence

⇒Summary: seq-len = 198503 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37208-46576 bp Zoom in on locus 1 x9 x4 CRISPR array Location: 37208-37716 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37208-37716 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 37965-38528 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38532-39560 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39571-40554 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40541-41845 bp Gene: COG1203:cas3 Type: Type-I Location: 41903-45133 bp Gene: cd09718:cas1 Type: universal Location: 45130-46104 bp CRISPR array Location: 46369-46576 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 46369-46576 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37208-37716 bp]: array | spacers
           [Locus range 46369-46576 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHF01000045.1 Pseudomonas aeruginosa isolate 83 genome assembly, contig: 83.NODE_46_length_5264_cov_56.136967, whole genome shotgun sequence

⇒Summary: seq-len = 5328 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291-2179 bp Zoom in on locus 1 x32 CRISPR array Location: 291-2179 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 291-2179 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 291-2179 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)