CRISPRone

CRISPRone report for GCA_900144285.1_84

♦ Seq 1: FRHO01000033.1 Pseudomonas aeruginosa isolate 84 genome assembly, contig: 84.NODE_38_length_46794_cov_69.020088, whole genome shotgun sequence

⇒Summary: seq-len = 46850 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37200-46568 bp Zoom in on locus 1 x9 x4 CRISPR array Location: 37200-37708 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37200-37708 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 37957-38520 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38524-39552 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39563-40546 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40533-41837 bp Gene: COG1203:cas3 Type: Type-I Location: 41895-45125 bp Gene: cd09718:cas1 Type: universal Location: 45122-46096 bp CRISPR array Location: 46361-46568 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 46361-46568 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37200-37708 bp]: array | spacers
           [Locus range 46361-46568 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHO01000096.1 Pseudomonas aeruginosa isolate 84 genome assembly, contig: 84.NODE_154_length_170853_cov_69.377602, whole genome shotgun sequence

⇒Summary: seq-len = 170909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17180-19067 bp Zoom in on locus 1 x32 CRISPR array Location: 17180-19067 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 17180-19067 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17180-19067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)