CRISPRone

CRISPRone report for GCA_900144295.1_87

♦ Seq 1: FRHH01000062.1 Pseudomonas aeruginosa isolate 87 genome assembly, contig: 87.NODE_69_length_46792_cov_51.825867, whole genome shotgun sequence

⇒Summary: seq-len = 46846 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281-9649 bp Zoom in on locus 1 x4 x9 CRISPR array Location: 281-489 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 281-489 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09718:cas1 Type: universal Location: 753-1727 bp Gene: COG1203:cas3 Type: Type-I Location: 1724-4954 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5012-6316 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6303-7286 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7297-8325 bp Gene: cd09739:cas6f Type: other Location: 8329-8892 bp CRISPR array Location: 9142-9649 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 9142-9649 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 281-489 bp]: array | spacers
           [Locus range 9142-9649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHH01000072.1 Pseudomonas aeruginosa isolate 87 genome assembly, contig: 87.NODE_93_length_284118_cov_51.680145, whole genome shotgun sequence

⇒Summary: seq-len = 284172 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127970-129857 bp Zoom in on locus 1 x32 CRISPR array Location: 127970-129857 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 127970-129857 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 127970-129857 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)