CRISPRone

CRISPRone report for GCA_900144305.1_90

♦ Seq 1: FRHK01000053.1 Pseudomonas aeruginosa isolate 90 genome assembly, contig: 90.NODE_80_length_47262_cov_77.225616, whole genome shotgun sequence

⇒Summary: seq-len = 47312 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 277-10125 bp Zoom in on locus 1 x12 x9 CRISPR array Location: 277-965 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 277-965 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 1229-2203 bp Gene: COG1203:cas3 Type: Type-I Location: 2200-5430 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5488-6792 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6779-7762 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7773-8801 bp Gene: cd09739:cas6f Type: other Location: 8805-9368 bp CRISPR array Location: 9618-10125 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 9618-10125 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 277-965 bp]: array | spacers
           [Locus range 9618-10125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHK01000099.1 Pseudomonas aeruginosa isolate 90 genome assembly, contig: 90.NODE_213_length_19790_cov_76.359825, whole genome shotgun sequence

⇒Summary: seq-len = 19840 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17195-19082 bp Zoom in on locus 1 x32 CRISPR array Location: 17195-19082 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 17195-19082 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17195-19082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)