CRISPRone

CRISPRone report for GCA_900144315.1_88

♦ Seq 1: FRHM01000016.1 Pseudomonas aeruginosa isolate 88 genome assembly, contig: 88.NODE_17_length_181203_cov_65.654953, whole genome shotgun sequence

⇒Summary: seq-len = 181253 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37188-47036 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 37188-37696 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37188-37696 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 37945-38508 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38512-39540 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39551-40534 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40521-41825 bp Gene: COG1203:cas3 Type: Type-I Location: 41883-45113 bp Gene: cd09718:cas1 Type: universal Location: 45110-46084 bp CRISPR array Location: 46349-47036 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 46349-47036 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37188-37696 bp]: array | spacers
           [Locus range 46349-47036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHM01000002.1 Pseudomonas aeruginosa isolate 88 genome assembly, contig: 88.NODE_2_length_634282_cov_67.144089, whole genome shotgun sequence

⇒Summary: seq-len = 634332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 328397-330284 bp Zoom in on locus 1 x32 CRISPR array Location: 328397-330284 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 328397-330284 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 328397-330284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)