CRISPRone

CRISPRone report for GCA_900144765.1_135

♦ Seq 1: FRJF01000075.1 Pseudomonas aeruginosa isolate 135 genome assembly, contig: 135.NODE_75_length_8257_cov_54.468815, whole genome shotgun sequence

⇒Summary: seq-len = 8305 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4622-4770 bp Zoom in on locus 1 x3 CRISPR array Location: 4622-4770 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4622-4770 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4622-4770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJF01000119.1 Pseudomonas aeruginosa isolate 135 genome assembly, contig: 135.NODE_121_length_34297_cov_64.614166, whole genome shotgun sequence

⇒Summary: seq-len = 34345 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8280-19893 bp Zoom in on locus 1 x16 x10 x13 CRISPR array Location: 8280-9226 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 8280-9226 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 9999-12680 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12683-14251 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14248-14778 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14788-15930 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15933-16595 bp Gene: pfam08798:cas6e Type: other Location: 16642-17181 bp Gene: cd09719:cas1 Type: universal Location: 17208-18098 bp Gene: pfam09707:cas2 Type: universal Location: 18095-18394 bp CRISPR array Location: 18459-19037 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 18459-19037 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 19132-19893 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 19132-19893 bp Num of repeats: 13 Spacers: s25-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8280-9226 bp]: array | spacers
           [Locus range 18459-19037 bp]: array | spacers
           [Locus range 19132-19893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)