CRISPRone

CRISPRone report for GCA_900144775.1_134

♦ Seq 1: FRJE01000166.1 Pseudomonas aeruginosa isolate 134 genome assembly, contig: 134.NODE_203_length_8618_cov_43.537014, whole genome shotgun sequence

⇒Summary: seq-len = 8672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4743-4891 bp Zoom in on locus 1 x3 CRISPR array Location: 4743-4891 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4743-4891 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4743-4891 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJE01000033.1 Pseudomonas aeruginosa isolate 134 genome assembly, contig: 134.NODE_35_length_32199_cov_46.576260, whole genome shotgun sequence

⇒Summary: seq-len = 32253 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8405-20079 bp Zoom in on locus 1 x16 x10 x14 CRISPR array Location: 8405-9351 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 8405-9351 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 10124-12805 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12808-14376 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14373-14903 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14913-16055 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16058-16720 bp Gene: pfam08798:cas6e Type: other Location: 16767-17306 bp Gene: cd09719:cas1 Type: universal Location: 17333-18223 bp Gene: pfam09707:cas2 Type: universal Location: 18220-18519 bp CRISPR array Location: 18584-19162 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 18584-19162 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 19257-20079 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 19257-20079 bp Num of repeats: 14 Spacers: s25-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8405-9351 bp]: array | spacers
           [Locus range 18584-19162 bp]: array | spacers
           [Locus range 19257-20079 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)