CRISPRone

CRISPRone report for GCA_900144785.1_136

♦ Seq 1: FRJK01000546.1 Pseudomonas aeruginosa isolate 136 genome assembly, contig: 136.NODE_723_length_837_cov_48.464756, whole genome shotgun sequence

⇒Summary: seq-len = 889 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300-448 bp Zoom in on locus 1 x3 CRISPR array Location: 300-448 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 300-448 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 300-448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJK01001653.1 Pseudomonas aeruginosa isolate 136 genome assembly, contig: 136.NODE_2372_length_2747_cov_85.500908, whole genome shotgun sequence

⇒Summary: seq-len = 2799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 968-1729 bp Zoom in on locus 1 x13 CRISPR array Location: 968-1729 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 968-1729 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 968-1729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRJK01000246.1 Pseudomonas aeruginosa isolate 136 genome assembly, contig: 136.NODE_308_length_1869_cov_96.662384, whole genome shotgun sequence

⇒Summary: seq-len = 1921 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24-175 bp Zoom in on locus 1 x3 CRISPR array Location: 24-175 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 24-175 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24-175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FRJK01001554.1 Pseudomonas aeruginosa isolate 136 genome assembly, contig: 136.NODE_2203_length_8606_cov_103.678368, whole genome shotgun sequence

⇒Summary: seq-len = 8658 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-8656 bp Zoom in on locus 1 x11 x10 CRISPR array Location: 0-627 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-627 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 723-1300 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 723-1300 bp Num of repeats: 10 Spacers: s11-s19 Gene: pfam09707:cas2 Type: universal Location: 1365-1664 bp Gene: cd09719:cas1 Type: universal Location: 1661-2551 bp Gene: pfam08798:cas6e Type: other Location: 2578-3117 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3164-3826 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3829-4971 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4981-5511 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5508-7076 bp Gene: COG1203:cas3 Type: Type-I Location: 7079-8656 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-627 bp]: array | spacers
           [Locus range 723-1300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)