CRISPRone

CRISPRone report for GCA_900144815.1_139

♦ Seq 1: FRJW01001002.1 Pseudomonas aeruginosa isolate 139 genome assembly, contig: 139.NODE_1237_length_4794_cov_67.461411, whole genome shotgun sequence

⇒Summary: seq-len = 4844 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4236-4384 bp Zoom in on locus 1 x3 CRISPR array Location: 4236-4384 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4236-4384 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4236-4384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJW01000503.1 Pseudomonas aeruginosa isolate 139 genome assembly, contig: 139.NODE_590_length_16597_cov_82.228958, whole genome shotgun sequence

⇒Summary: seq-len = 16647 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1111-12724 bp Zoom in on locus 1 x16 x10 x13 CRISPR array Location: 1111-2057 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1111-2057 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 2830-5511 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5514-7082 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 7079-7609 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 7619-8761 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 8764-9426 bp Gene: pfam08798:cas6e Type: other Location: 9473-10012 bp Gene: cd09719:cas1 Type: universal Location: 10039-10929 bp Gene: pfam09707:cas2 Type: universal Location: 10926-11225 bp CRISPR array Location: 11290-11868 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 11290-11868 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 11963-12724 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 11963-12724 bp Num of repeats: 13 Spacers: s25-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1111-2057 bp]: array | spacers
           [Locus range 11290-11868 bp]: array | spacers
           [Locus range 11963-12724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)