CRISPRone

CRISPRone report for GCA_900144825.1_140

♦ Seq 1: FRKE01000350.1 Pseudomonas aeruginosa isolate 140 genome assembly, contig: 140.NODE_441_length_10596_cov_102.145058, whole genome shotgun sequence

⇒Summary: seq-len = 10650 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1754-10648 bp Zoom in on locus 1 x13 x10 CRISPR array Location: 1754-2514 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1754-2514 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2610-3187 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 2610-3187 bp Num of repeats: 10 Spacers: s13-s21 Gene: pfam09707:cas2 Type: universal Location: 3252-3551 bp Gene: cd09719:cas1 Type: universal Location: 3548-4465 bp Gene: pfam08798:cas6e Type: other Location: 4465-5004 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5051-5713 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5716-6858 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 6868-7398 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 7395-8963 bp Gene: COG1203:cas3 Type: Type-I Location: 8966-10648 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1754-2514 bp]: array | spacers
           [Locus range 2610-3187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKE01000515.1 Pseudomonas aeruginosa isolate 140 genome assembly, contig: 140.NODE_661_length_4309_cov_89.251564, whole genome shotgun sequence

⇒Summary: seq-len = 4363 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3767-3915 bp Zoom in on locus 1 x3 CRISPR array Location: 3767-3915 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3767-3915 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3767-3915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRKE01000608.1 Pseudomonas aeruginosa isolate 140 genome assembly, contig: 140.NODE_779_length_2953_cov_88.228920, whole genome shotgun sequence

⇒Summary: seq-len = 3007 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1094-2040 bp Zoom in on locus 1 x16 CRISPR array Location: 1094-2040 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1094-2040 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1094-2040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)