CRISPRone

CRISPRone report for GCA_900144835.1_141

♦ Seq 1: FRKD01000082.1 Pseudomonas aeruginosa isolate 141 genome assembly, contig: 141.NODE_96_length_3279_cov_101.460205, whole genome shotgun sequence

⇒Summary: seq-len = 3317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1286-2231 bp Zoom in on locus 1 x16 CRISPR array Location: 1286-2231 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1286-2231 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1286-2231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKD01001845.1 Pseudomonas aeruginosa isolate 141 genome assembly, contig: 141.NODE_3278_length_870_cov_59.719540, whole genome shotgun sequence

⇒Summary: seq-len = 908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 443-590 bp Zoom in on locus 1 x3 CRISPR array Location: 443-590 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 443-590 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 443-590 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRKD01000240.1 Pseudomonas aeruginosa isolate 141 genome assembly, contig: 141.NODE_312_length_10529_cov_123.463959, whole genome shotgun sequence

⇒Summary: seq-len = 10567 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1775-10564 bp Zoom in on locus 1 x13 x10 CRISPR array Location: 1775-2535 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1775-2535 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2631-3208 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 2631-3208 bp Num of repeats: 10 Spacers: s13-s21 Gene: pfam09707:cas2 Type: universal Location: 3273-3572 bp Gene: cd09719:cas1 Type: universal Location: 3569-4486 bp Gene: pfam08798:cas6e Type: other Location: 4486-5025 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5072-5734 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5737-6879 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 6889-7419 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 7416-8984 bp Gene: COG1203:cas3 Type: Type-I Location: 8987-10564 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1775-2535 bp]: array | spacers
           [Locus range 2631-3208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)