CRISPRone

CRISPRone report for GCA_900144845.1_143

♦ Seq 1: FRKM01000391.1 Pseudomonas aeruginosa isolate 143 genome assembly, contig: 143.NODE_496_length_2928_cov_92.786888, whole genome shotgun sequence

⇒Summary: seq-len = 2980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1068-2014 bp Zoom in on locus 1 x16 CRISPR array Location: 1068-2014 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1068-2014 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1068-2014 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKM01000880.1 Pseudomonas aeruginosa isolate 143 genome assembly, contig: 143.NODE_1179_length_4271_cov_106.546944, whole genome shotgun sequence

⇒Summary: seq-len = 4323 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 443-590 bp Zoom in on locus 1 x3 CRISPR array Location: 443-590 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 443-590 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 443-590 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRKM01001157.1 Pseudomonas aeruginosa isolate 143 genome assembly, contig: 143.NODE_1583_length_5850_cov_123.018631, whole genome shotgun sequence

⇒Summary: seq-len = 5902 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-5900 bp Zoom in on locus 1 x11 x10 CRISPR array Location: 0-627 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-627 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 723-1300 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 723-1300 bp Num of repeats: 10 Spacers: s11-s19 Gene: pfam09707:cas2 Type: universal Location: 1365-1664 bp Gene: cd09719:cas1 Type: universal Location: 1661-2551 bp Gene: pfam08798:cas6e Type: other Location: 2578-3117 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3164-3826 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3829-4971 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4981-5511 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5508-5900 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-627 bp]: array | spacers
           [Locus range 723-1300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FRKM01000642.1 Pseudomonas aeruginosa isolate 143 genome assembly, contig: 143.NODE_836_length_1874_cov_105.003738, whole genome shotgun sequence

⇒Summary: seq-len = 1926 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1753-1903 bp Zoom in on locus 1 x3 CRISPR array Location: 1753-1903 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1753-1903 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1753-1903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FRKM01000109.1 Pseudomonas aeruginosa isolate 143 genome assembly, contig: 143.NODE_138_length_2717_cov_91.456383, whole genome shotgun sequence

⇒Summary: seq-len = 2769 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2766 bp Zoom in on locus 1 Gene: pfam09481:cas8e Type: Subtype-I-E Location: 2-1186 bp Gene: COG1203:cas3 Type: Type-I Location: 1189-2766 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)