CRISPRone

CRISPRone report for GCA_900144855.1_142

♦ Seq 1: FRJX01001783.1 Pseudomonas aeruginosa isolate 142 genome assembly, contig: 142.NODE_2677_length_1879_cov_105.661522, whole genome shotgun sequence

⇒Summary: seq-len = 1933 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26-177 bp Zoom in on locus 1 x3 CRISPR array Location: 26-177 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 26-177 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26-177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJX01001615.1 Pseudomonas aeruginosa isolate 142 genome assembly, contig: 142.NODE_2263_length_8668_cov_112.844139, whole genome shotgun sequence

⇒Summary: seq-len = 8722 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8733 bp Zoom in on locus 1 x10 x11 Gene: COG1203:cas3 Type: Type-I Location: 2-1642 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1645-3213 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3210-3740 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3750-4892 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4895-5557 bp Gene: pfam08798:cas6e Type: other Location: 5604-6143 bp Gene: cd09719:cas1 Type: universal Location: 6170-7060 bp Gene: pfam09707:cas2 Type: universal Location: 7057-7356 bp CRISPR array Location: 7421-7999 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 7421-7999 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8094-8733 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 8094-8733 bp Num of repeats: 11 Spacers: s10-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7421-7999 bp]: array | spacers
           [Locus range 8094-8733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRJX01001458.1 Pseudomonas aeruginosa isolate 142 genome assembly, contig: 142.NODE_1988_length_4280_cov_98.606773, whole genome shotgun sequence

⇒Summary: seq-len = 4334 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 438-585 bp Zoom in on locus 1 x3 CRISPR array Location: 438-585 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 438-585 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 438-585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FRJX01000167.1 Pseudomonas aeruginosa isolate 142 genome assembly, contig: 142.NODE_197_length_3711_cov_72.449478, whole genome shotgun sequence

⇒Summary: seq-len = 3765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1789-2673 bp Zoom in on locus 1 x15 CRISPR array Location: 1789-2673 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1789-2673 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1789-2673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)