CRISPRone

CRISPRone report for GCA_900144865.1_145

♦ Seq 1: FRJV01000439.1 Pseudomonas aeruginosa isolate 145 genome assembly, contig: 145.NODE_498_length_4778_cov_66.101929, whole genome shotgun sequence

⇒Summary: seq-len = 4828 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 470-617 bp Zoom in on locus 1 x3 CRISPR array Location: 470-617 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 470-617 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 470-617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJV01000220.1 Pseudomonas aeruginosa isolate 145 genome assembly, contig: 145.NODE_253_length_16592_cov_80.435753, whole genome shotgun sequence

⇒Summary: seq-len = 16642 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1107-12720 bp Zoom in on locus 1 x16 x10 x13 CRISPR array Location: 1107-2053 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1107-2053 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 2826-5507 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5510-7078 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 7075-7605 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 7615-8757 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 8760-9422 bp Gene: pfam08798:cas6e Type: other Location: 9469-10008 bp Gene: cd09719:cas1 Type: universal Location: 10035-10925 bp Gene: pfam09707:cas2 Type: universal Location: 10922-11221 bp CRISPR array Location: 11286-11864 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 11286-11864 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 11959-12720 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 11959-12720 bp Num of repeats: 13 Spacers: s25-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1107-2053 bp]: array | spacers
           [Locus range 11286-11864 bp]: array | spacers
           [Locus range 11959-12720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)