CRISPRone

CRISPRone report for GCA_900144885.1_146

♦ Seq 1: FRKJ01000703.1 Pseudomonas aeruginosa isolate 146 genome assembly, contig: 146.NODE_902_length_4322_cov_80.325775, whole genome shotgun sequence

⇒Summary: seq-len = 4372 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3774-3922 bp Zoom in on locus 1 x3 CRISPR array Location: 3774-3922 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3774-3922 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3774-3922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKJ01000044.1 Pseudomonas aeruginosa isolate 146 genome assembly, contig: 146.NODE_45_length_10519_cov_97.260292, whole genome shotgun sequence

⇒Summary: seq-len = 10569 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1780-10566 bp Zoom in on locus 1 x13 x10 CRISPR array Location: 1780-2540 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1780-2540 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2636-3213 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 2636-3213 bp Num of repeats: 10 Spacers: s13-s21 Gene: pfam09707:cas2 Type: universal Location: 3278-3577 bp Gene: cd09719:cas1 Type: universal Location: 3574-4491 bp Gene: pfam08798:cas6e Type: other Location: 4491-5030 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5077-5739 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5742-6884 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 6894-7424 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 7421-8989 bp Gene: COG1203:cas3 Type: Type-I Location: 8992-10566 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1780-2540 bp]: array | spacers
           [Locus range 2636-3213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRKJ01000546.1 Pseudomonas aeruginosa isolate 146 genome assembly, contig: 146.NODE_684_length_3684_cov_77.605865, whole genome shotgun sequence

⇒Summary: seq-len = 3734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1089-2035 bp Zoom in on locus 1 x16 CRISPR array Location: 1089-2035 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1089-2035 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1089-2035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)