CRISPRone

CRISPRone report for GCA_900144895.1_147

♦ Seq 1: FRKO01000976.1 Pseudomonas aeruginosa isolate 147 genome assembly, contig: 147.NODE_1317_length_10482_cov_103.911369, whole genome shotgun sequence

⇒Summary: seq-len = 10534 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8792 bp Zoom in on locus 1 x10 x13 Gene: COG1203:cas3 Type: Type-I Location: 2-1579 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1582-3150 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3147-3677 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3687-4829 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4832-5494 bp Gene: pfam08798:cas6e Type: other Location: 5541-6080 bp Gene: cd09719:cas1 Type: universal Location: 6107-6997 bp Gene: pfam09707:cas2 Type: universal Location: 6994-7293 bp CRISPR array Location: 7358-7936 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 7358-7936 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8031-8792 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 8031-8792 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7358-7936 bp]: array | spacers
           [Locus range 8031-8792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKO01001632.1 Pseudomonas aeruginosa isolate 147 genome assembly, contig: 147.NODE_2384_length_4268_cov_100.493675, whole genome shotgun sequence

⇒Summary: seq-len = 4320 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3721-3869 bp Zoom in on locus 1 x3 CRISPR array Location: 3721-3869 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3721-3869 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3721-3869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRKO01000610.1 Pseudomonas aeruginosa isolate 147 genome assembly, contig: 147.NODE_804_length_2940_cov_88.016327, whole genome shotgun sequence

⇒Summary: seq-len = 2992 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1090-2036 bp Zoom in on locus 1 x16 CRISPR array Location: 1090-2036 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1090-2036 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1090-2036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)