CRISPRone

CRISPRone report for GCA_900144905.1_148

♦ Seq 1: FRJH01000045.1 Pseudomonas aeruginosa isolate 148 genome assembly, contig: 148.NODE_51_length_8511_cov_51.112679, whole genome shotgun sequence

⇒Summary: seq-len = 8561 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3790-3937 bp Zoom in on locus 1 x3 CRISPR array Location: 3790-3937 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3790-3937 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3790-3937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRJH01000101.1 Pseudomonas aeruginosa isolate 148 genome assembly, contig: 148.NODE_111_length_32083_cov_59.902782, whole genome shotgun sequence

⇒Summary: seq-len = 32133 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12174-23786 bp Zoom in on locus 1 x13 x10 x16 CRISPR array Location: 12174-12934 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 12174-12934 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 13030-13607 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 13030-13607 bp Num of repeats: 10 Spacers: s13-s21 Gene: pfam09707:cas2 Type: universal Location: 13672-13971 bp Gene: cd09719:cas1 Type: universal Location: 13968-14858 bp Gene: pfam08798:cas6e Type: other Location: 14885-15424 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15471-16133 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 16136-17278 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 17288-17818 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 17815-19383 bp Gene: COG1203:cas3 Type: Type-I Location: 19386-22067 bp CRISPR array Location: 22841-23786 bp Num of repeats: 16 Spacers: s22-s36 CRISPR array Location: 22841-23786 bp Num of repeats: 16 Spacers: s22-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12174-12934 bp]: array | spacers
           [Locus range 13030-13607 bp]: array | spacers
           [Locus range 22841-23786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)