CRISPRone

CRISPRone report for GCA_900145135.1_170

♦ Seq 1: FRKQ01000116.1 Pseudomonas aeruginosa isolate 170 genome assembly, contig: 170.NODE_148_length_70605_cov_56.152794, whole genome shotgun sequence

⇒Summary: seq-len = 70647 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23901-34345 bp Zoom in on locus 1 x12 x19 CRISPR array Location: 23901-24589 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 23901-24589 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 24838-25401 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 25405-26433 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26444-27427 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27414-28718 bp Gene: COG1203:cas3 Type: Type-I Location: 28776-32006 bp Gene: cd09718:cas1 Type: universal Location: 32003-32977 bp CRISPR array Location: 33238-34345 bp Num of repeats: 19 Spacers: s12-s29 CRISPR array Location: 33238-34345 bp Num of repeats: 19 Spacers: s12-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23901-24589 bp]: array | spacers
           [Locus range 33238-34345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)