CRISPRone

CRISPRone report for GCA_900145155.1_173

♦ Seq 1: FRKR01000116.1 Pseudomonas aeruginosa isolate 173 genome assembly, contig: 173.NODE_279_length_37117_cov_44.073902, whole genome shotgun sequence

⇒Summary: seq-len = 37161 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17-104 bp Zoom in on locus 1 x2 CRISPR array Location: 17-104 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17-104 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17-104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKR01000087.1 Pseudomonas aeruginosa isolate 173 genome assembly, contig: 173.NODE_131_length_388_cov_65.541237, whole genome shotgun sequence

⇒Summary: seq-len = 432 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90-417 bp Zoom in on locus 1 x6 CRISPR array Location: 90-417 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 90-417 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90-417 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRKR01000052.1 Pseudomonas aeruginosa isolate 173 genome assembly, contig: 173.NODE_62_length_366917_cov_46.359257, whole genome shotgun sequence

⇒Summary: seq-len = 366961 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12149-23333 bp Zoom in on locus 1 x21 x12 CRISPR array Location: 12149-13398 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 12149-13398 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09707:cas2 Type: universal Location: 13463-13762 bp Gene: cd09719:cas1 Type: universal Location: 13759-14649 bp Gene: pfam08798:cas6e Type: other Location: 14676-15215 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15262-15924 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15926-17068 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 17078-17608 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 17605-19173 bp Gene: cd09641:cas3HD Type: Type-I Location: 19176-21857 bp CRISPR array Location: 22633-23333 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 22633-23333 bp Num of repeats: 12 Spacers: s21-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12149-13398 bp]: array | spacers
           [Locus range 22633-23333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)