CRISPRone

CRISPRone report for GCA_900145165.1_174

♦ Seq 1: FRKS01000052.1 Pseudomonas aeruginosa isolate 174 genome assembly, contig: 174.NODE_66_length_29353_cov_63.788166, whole genome shotgun sequence

⇒Summary: seq-len = 29395 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12148-23515 bp Zoom in on locus 1 x21 x15 CRISPR array Location: 12148-13397 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 12148-13397 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09707:cas2 Type: universal Location: 13462-13761 bp Gene: cd09719:cas1 Type: universal Location: 13758-14648 bp Gene: pfam08798:cas6e Type: other Location: 14675-15214 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15261-15923 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15925-17067 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 17077-17607 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 17604-19172 bp Gene: cd09641:cas3HD Type: Type-I Location: 19175-21856 bp CRISPR array Location: 22632-23515 bp Num of repeats: 15 Spacers: s21-s34 CRISPR array Location: 22632-23515 bp Num of repeats: 15 Spacers: s21-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12148-13397 bp]: array | spacers
           [Locus range 22632-23515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKS01000006.1 Pseudomonas aeruginosa isolate 174 genome assembly, contig: 174.NODE_6_length_25077_cov_61.761574, whole genome shotgun sequence

⇒Summary: seq-len = 25119 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88-535 bp Zoom in on locus 1 x8 CRISPR array Location: 88-535 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 88-535 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88-535 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)