CRISPRone

CRISPRone report for GCA_900145175.1_175

♦ Seq 1: FRKT01000055.1 Pseudomonas aeruginosa isolate 175 genome assembly, contig: 175.NODE_70_length_29354_cov_74.504295, whole genome shotgun sequence

⇒Summary: seq-len = 29392 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5857-17225 bp Zoom in on locus 1 x15 x21 CRISPR array Location: 5857-6741 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 5857-6741 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 7516-10197 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 10200-11768 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 11765-12295 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 12305-13447 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 13449-14111 bp Gene: pfam08798:cas6e Type: other Location: 14086-14697 bp Gene: cd09719:cas1 Type: universal Location: 14724-15614 bp Gene: pfam09707:cas2 Type: universal Location: 15611-15910 bp CRISPR array Location: 15975-17225 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 15975-17225 bp Num of repeats: 21 Spacers: s15-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5857-6741 bp]: array | spacers
           [Locus range 15975-17225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKT01000038.1 Pseudomonas aeruginosa isolate 175 genome assembly, contig: 175.NODE_51_length_25068_cov_71.924004, whole genome shotgun sequence

⇒Summary: seq-len = 25106 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24576-25024 bp Zoom in on locus 1 x8 CRISPR array Location: 24576-25024 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 24576-25024 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24576-25024 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)