CRISPRone

CRISPRone report for GCA_900145195.1_178

♦ Seq 1: FRKV01000090.1 Pseudomonas aeruginosa isolate 178 genome assembly, contig: 178.NODE_177_length_62708_cov_53.955429, whole genome shotgun sequence

⇒Summary: seq-len = 62752 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 329-1377 bp Zoom in on locus 1 x18 CRISPR array Location: 329-1377 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 329-1377 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 329-1377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRKV01000091.1 Pseudomonas aeruginosa isolate 178 genome assembly, contig: 178.NODE_180_length_49027_cov_53.975319, whole genome shotgun sequence

⇒Summary: seq-len = 49071 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330-10939 bp Zoom in on locus 1 x13 x16 CRISPR array Location: 330-1079 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 330-1079 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1339-2313 bp Gene: COG1203:cas3 Type: Type-I Location: 2310-5540 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5951-7252 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7239-8222 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8233-9261 bp Gene: cd09739:cas6f Type: other Location: 9265-9828 bp CRISPR array Location: 10012-10939 bp Num of repeats: 16 Spacers: s13-s27 CRISPR array Location: 10012-10939 bp Num of repeats: 16 Spacers: s13-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 330-1079 bp]: array | spacers
           [Locus range 10012-10939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)