CRISPRone

CRISPRone report for GCA_900145255.1_183

♦ Seq 1: FRLB01000076.1 Pseudomonas aeruginosa isolate 183 genome assembly, contig: 183.NODE_120_length_398452_cov_53.496361, whole genome shotgun sequence

⇒Summary: seq-len = 398502 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12169-23536 bp Zoom in on locus 1 x21 x15 CRISPR array Location: 12169-13418 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 12169-13418 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09707:cas2 Type: universal Location: 13483-13782 bp Gene: cd09719:cas1 Type: universal Location: 13779-14669 bp Gene: pfam08798:cas6e Type: other Location: 14696-15235 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15282-15944 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15946-17088 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 17098-17628 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 17625-19193 bp Gene: cd09641:cas3HD Type: Type-I Location: 19196-21877 bp CRISPR array Location: 22653-23536 bp Num of repeats: 15 Spacers: s21-s34 CRISPR array Location: 22653-23536 bp Num of repeats: 15 Spacers: s21-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12169-13418 bp]: array | spacers
           [Locus range 22653-23536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRLB01000017.1 Pseudomonas aeruginosa isolate 183 genome assembly, contig: 183.NODE_18_length_33783_cov_48.817986, whole genome shotgun sequence

⇒Summary: seq-len = 33833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33291-33739 bp Zoom in on locus 1 x8 CRISPR array Location: 33291-33739 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 33291-33739 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33291-33739 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)