CRISPRone

CRISPRone report for GCA_900145265.1_184

♦ Seq 1: FRLC01000021.1 Pseudomonas aeruginosa isolate 184 genome assembly, contig: 184.NODE_21_length_25109_cov_47.671513, whole genome shotgun sequence

⇒Summary: seq-len = 25163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100-547 bp Zoom in on locus 1 x8 CRISPR array Location: 100-547 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 100-547 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100-547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRLC01000029.1 Pseudomonas aeruginosa isolate 184 genome assembly, contig: 184.NODE_29_length_29376_cov_50.719635, whole genome shotgun sequence

⇒Summary: seq-len = 29430 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5891-17259 bp Zoom in on locus 1 x15 x21 CRISPR array Location: 5891-6775 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 5891-6775 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 7550-10231 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 10234-11802 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 11799-12329 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 12339-13481 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 13483-14145 bp Gene: pfam08798:cas6e Type: other Location: 14120-14731 bp Gene: cd09719:cas1 Type: universal Location: 14758-15648 bp Gene: pfam09707:cas2 Type: universal Location: 15645-15944 bp CRISPR array Location: 16009-17259 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 16009-17259 bp Num of repeats: 21 Spacers: s15-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5891-6775 bp]: array | spacers
           [Locus range 16009-17259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)