CRISPRone

CRISPRone report for GCA_900145385.1_196

♦ Seq 1: FRLO01000091.1 Pseudomonas aeruginosa isolate 196 genome assembly, contig: 196.NODE_105_length_121434_cov_56.465782, whole genome shotgun sequence

⇒Summary: seq-len = 121478 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120382-121429 bp Zoom in on locus 1 x18 CRISPR array Location: 120382-121429 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 120382-121429 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120382-121429 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRLO01000042.1 Pseudomonas aeruginosa isolate 196 genome assembly, contig: 196.NODE_43_length_35856_cov_55.125809, whole genome shotgun sequence

⇒Summary: seq-len = 35900 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50-10311 bp Zoom in on locus 1 x14 x15 CRISPR array Location: 50-859 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 50-859 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 1120-2094 bp Gene: COG1203:cas3 Type: Type-I Location: 2091-5321 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5379-6683 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6670-7653 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7664-8692 bp Gene: cd09739:cas6f Type: other Location: 8696-9259 bp CRISPR array Location: 9443-10311 bp Num of repeats: 15 Spacers: s14-s27 CRISPR array Location: 9443-10311 bp Num of repeats: 15 Spacers: s14-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 50-859 bp]: array | spacers
           [Locus range 9443-10311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)