CRISPRone

CRISPRone report for GCA_900145475.1_205

♦ Seq 1: FRLY01000017.1 Pseudomonas aeruginosa isolate 205 genome assembly, contig: 205.NODE_18_length_213053_cov_56.484360, whole genome shotgun sequence

⇒Summary: seq-len = 213107 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54170-64755 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 54170-55039 bp Gene: pfam00078:RT Type: other Location: 59948-61216 bp Gene: unk Type: unknown Location: 61366-61764 bp Gene: unk Type: unknown Location: 61948-62127 bp Gene: cls000170:cas4 Type: Type-I Location: 63211-64755 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRLY01000041.1 Pseudomonas aeruginosa isolate 205 genome assembly, contig: 205.NODE_47_length_71227_cov_54.876423, whole genome shotgun sequence

⇒Summary: seq-len = 71281 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36357-47518 bp Zoom in on locus 1 x11 x33 CRISPR array Location: 36357-36985 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 36357-36985 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 37169-37732 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37736-38764 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38775-39758 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39745-41049 bp Gene: COG1203:cas3 Type: Type-I Location: 41107-44337 bp Gene: cd09718:cas1 Type: universal Location: 44334-45308 bp CRISPR array Location: 45570-47518 bp Num of repeats: 33 Spacers: s11-s42 CRISPR array Location: 45570-47518 bp Num of repeats: 33 Spacers: s11-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36357-36985 bp]: array | spacers
           [Locus range 45570-47518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRLY01000028.1 Pseudomonas aeruginosa isolate 205 genome assembly, contig: 205.NODE_29_length_248944_cov_56.991093, whole genome shotgun sequence

⇒Summary: seq-len = 248998 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179458-200092 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 179458-180201 bp Gene: unk Type: unknown Location: 180534-181406 bp Gene: unk Type: unknown Location: 181442-182008 bp Gene: cd09637:cas4 Type: other Location: 182016-184667 bp Gene: pfam13280:WYL Type: other Location: 191469-192488 bp Gene: pfam13280:WYL Type: other Location: 195327-196202 bp Gene: unk Type: unknown Location: 196333-196620 bp Gene: unk Type: unknown Location: 196755-197333 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 197726-200092 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)