CRISPRone

CRISPRone report for GCA_900145505.1_208

♦ Seq 1: FRMA01000009.1 Pseudomonas aeruginosa isolate 208 genome assembly, contig: 208.NODE_9_length_366870_cov_62.116798, whole genome shotgun sequence

⇒Summary: seq-len = 366920 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56-1104 bp Zoom in on locus 1 x18 CRISPR array Location: 56-1104 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 56-1104 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56-1104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRMA01000039.1 Pseudomonas aeruginosa isolate 208 genome assembly, contig: 208.NODE_50_length_48429_cov_58.952694, whole genome shotgun sequence

⇒Summary: seq-len = 48479 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38163-48424 bp Zoom in on locus 1 x15 x14 CRISPR array Location: 38163-39032 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38163-39032 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39215-39778 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39782-40810 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40821-41804 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41791-43095 bp Gene: COG1203:cas3 Type: Type-I Location: 43153-46383 bp Gene: cd09718:cas1 Type: universal Location: 46380-47354 bp CRISPR array Location: 47616-48424 bp Num of repeats: 14 Spacers: s15-s27 CRISPR array Location: 47616-48424 bp Num of repeats: 14 Spacers: s15-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38163-39032 bp]: array | spacers
           [Locus range 47616-48424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)