CRISPRone

CRISPRone report for GCA_900145545.1_212

♦ Seq 1: FRME01000021.1 Pseudomonas aeruginosa isolate 212 genome assembly, contig: 212.NODE_22_length_63750_cov_56.696438, whole genome shotgun sequence

⇒Summary: seq-len = 63808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61848-62895 bp Zoom in on locus 1 x18 CRISPR array Location: 61848-62895 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 61848-62895 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61848-62895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRME01000054.1 Pseudomonas aeruginosa isolate 212 genome assembly, contig: 212.NODE_72_length_254591_cov_55.802113, whole genome shotgun sequence

⇒Summary: seq-len = 254649 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82372-92633 bp Zoom in on locus 1 x15 x14 CRISPR array Location: 82372-83241 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 82372-83241 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 83424-83987 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 83991-85019 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 85030-86013 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 86000-87304 bp Gene: COG1203:cas3 Type: Type-I Location: 87362-90592 bp Gene: cd09718:cas1 Type: universal Location: 90589-91563 bp CRISPR array Location: 91825-92633 bp Num of repeats: 14 Spacers: s15-s27 CRISPR array Location: 91825-92633 bp Num of repeats: 14 Spacers: s15-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82372-83241 bp]: array | spacers
           [Locus range 91825-92633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)