CRISPRone

CRISPRone report for GCA_900145565.1_214

♦ Seq 1: FRMG01000043.1 Pseudomonas aeruginosa isolate 214 genome assembly, contig: 214.NODE_50_length_203001_cov_51.710155, whole genome shotgun sequence

⇒Summary: seq-len = 203057 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44258-54843 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 44258-45127 bp Gene: pfam00078:RT Type: other Location: 50036-51304 bp Gene: unk Type: unknown Location: 51454-51852 bp Gene: unk Type: unknown Location: 52036-52215 bp Gene: cls000170:cas4 Type: Type-I Location: 53299-54843 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRMG01000099.1 Pseudomonas aeruginosa isolate 214 genome assembly, contig: 214.NODE_226_length_556401_cov_51.761864, whole genome shotgun sequence

⇒Summary: seq-len = 556457 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 357072-377706 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 357072-359438 bp Gene: unk Type: unknown Location: 359831-360478 bp Gene: unk Type: unknown Location: 360544-360831 bp Gene: pfam13280:WYL Type: other Location: 360962-361837 bp Gene: unk Type: unknown Location: 361852-362385 bp Gene: unk Type: unknown Location: 362442-362873 bp Gene: unk Type: unknown Location: 363191-364069 bp Gene: pfam13280:WYL Type: other Location: 364676-365695 bp Gene: cd09637:cas4 Type: other Location: 372497-375148 bp Gene: unk Type: unknown Location: 375156-375722 bp Gene: unk Type: unknown Location: 375758-376630 bp Gene: pfam13280:WYL Type: other Location: 376963-377706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRMG01000032.1 Pseudomonas aeruginosa isolate 214 genome assembly, contig: 214.NODE_36_length_67586_cov_46.409271, whole genome shotgun sequence

⇒Summary: seq-len = 67642 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23766-34927 bp Zoom in on locus 1 x33 x11 CRISPR array Location: 23766-25715 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 23766-25715 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09718:cas1 Type: universal Location: 25976-26950 bp Gene: COG1203:cas3 Type: Type-I Location: 26947-30177 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 30235-31539 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 31526-32509 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 32520-33548 bp Gene: cd09739:cas6f Type: other Location: 33552-34115 bp CRISPR array Location: 34300-34927 bp Num of repeats: 11 Spacers: s33-s42 CRISPR array Location: 34300-34927 bp Num of repeats: 11 Spacers: s33-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23766-25715 bp]: array | spacers
           [Locus range 34300-34927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)