CRISPRone

CRISPRone report for GCA_900145655.1_223

♦ Seq 1: FRMR01000100.1 Pseudomonas aeruginosa isolate 223 genome assembly, contig: 223.NODE_105_length_378872_cov_46.688244, whole genome shotgun sequence

⇒Summary: seq-len = 378922 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179543-200177 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 179543-181909 bp Gene: unk Type: unknown Location: 182302-182949 bp Gene: unk Type: unknown Location: 183015-183302 bp Gene: pfam13280:WYL Type: other Location: 183433-184308 bp Gene: unk Type: unknown Location: 184323-184856 bp Gene: unk Type: unknown Location: 184913-185344 bp Gene: unk Type: unknown Location: 185662-186540 bp Gene: pfam13280:WYL Type: other Location: 187147-188166 bp Gene: cd09637:cas4 Type: other Location: 194968-197619 bp Gene: unk Type: unknown Location: 197627-198193 bp Gene: unk Type: unknown Location: 198229-199101 bp Gene: pfam13280:WYL Type: other Location: 199434-200177 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRMR01000130.1 Pseudomonas aeruginosa isolate 223 genome assembly, contig: 223.NODE_145_length_47255_cov_41.563263, whole genome shotgun sequence

⇒Summary: seq-len = 47305 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23914-35075 bp Zoom in on locus 1 x11 x33 CRISPR array Location: 23914-24542 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 23914-24542 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 24726-25289 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 25293-26321 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26332-27315 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27302-28606 bp Gene: COG1203:cas3 Type: Type-I Location: 28664-31894 bp Gene: cd09718:cas1 Type: universal Location: 31891-32865 bp CRISPR array Location: 33127-35075 bp Num of repeats: 33 Spacers: s11-s42 CRISPR array Location: 33127-35075 bp Num of repeats: 33 Spacers: s11-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23914-24542 bp]: array | spacers
           [Locus range 33127-35075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRMR01000013.1 Pseudomonas aeruginosa isolate 223 genome assembly, contig: 223.NODE_13_length_62989_cov_47.810394, whole genome shotgun sequence

⇒Summary: seq-len = 63039 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8203-18788 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 8203-9747 bp Gene: unk Type: unknown Location: 10831-11010 bp Gene: unk Type: unknown Location: 11194-11592 bp Gene: pfam00078:RT Type: other Location: 11742-13010 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 17919-18788 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)