CRISPRone

CRISPRone report for GCA_900145835.1_250

♦ Seq 1: FRNG01000018.1 Pseudomonas aeruginosa isolate 250 genome assembly, contig: 250.NODE_19_length_188247_cov_56.196842, whole genome shotgun sequence

⇒Summary: seq-len = 188289 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147930-157659 bp Zoom in on locus 1 x30 Gene: cd09641:cas3HD Type: Type-I Location: 147930-150164 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 150215-150889 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 150886-152649 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 152661-153530 bp Gene: pfam01930:cas4 Type: Type-I Location: 153549-154181 bp Gene: cd09721:cas1 Type: universal Location: 154185-155225 bp Gene: cd09725:cas2 Type: universal Location: 155235-155525 bp CRISPR array Location: 155707-157659 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 155707-157659 bp Num of repeats: 30 Spacers: s1-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 155707-157659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRNG01000041.1 Pseudomonas aeruginosa isolate 250 genome assembly, contig: 250.NODE_49_length_409006_cov_51.093723, whole genome shotgun sequence

⇒Summary: seq-len = 409048 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 236379-237188 bp Zoom in on locus 1 x14 CRISPR array Location: 236379-237188 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 236379-237188 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 236379-237188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRNG01000009.1 Pseudomonas aeruginosa isolate 250 genome assembly, contig: 250.NODE_10_length_156656_cov_51.729752, whole genome shotgun sequence

⇒Summary: seq-len = 156698 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33358-44696 bp Zoom in on locus 1 x17 x30 CRISPR array Location: 33358-34346 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 33358-34346 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 34528-35091 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35095-36123 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36134-37117 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 37104-38408 bp Gene: COG1203:cas3 Type: Type-I Location: 38466-41696 bp Gene: cd09718:cas1 Type: universal Location: 41693-42667 bp CRISPR array Location: 42929-44696 bp Num of repeats: 30 Spacers: s17-s45 CRISPR array Location: 42929-44696 bp Num of repeats: 30 Spacers: s17-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33358-34346 bp]: array | spacers
           [Locus range 42929-44696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)