CRISPRone

CRISPRone report for GCA_900146105.1_280

♦ Seq 1: FROJ01000026.1 Pseudomonas aeruginosa isolate 280 genome assembly, contig: 280.NODE_26_length_35719_cov_41.791317, whole genome shotgun sequence

⇒Summary: seq-len = 35775 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8471-18983 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 8471-8989 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8471-8989 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 9762-12443 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12446-14014 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14011-14541 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14551-15693 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15695-16357 bp Gene: pfam08798:cas6e Type: other Location: 16332-16943 bp Gene: cd09719:cas1 Type: universal Location: 16970-17860 bp Gene: pfam09707:cas2 Type: universal Location: 17857-18156 bp CRISPR array Location: 18221-18983 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 18221-18983 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8471-8989 bp]: array | spacers
           [Locus range 18221-18983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)