CRISPRone

CRISPRone report for GCA_900146295.1_299

♦ Seq 1: FRPB01000051.1 Pseudomonas aeruginosa isolate 299 genome assembly, contig: 299.NODE_55_length_36384_cov_47.453659, whole genome shotgun sequence

⇒Summary: seq-len = 36428 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 260-10859 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 260-828 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 260-828 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1079-2053 bp Gene: COG1203:cas3 Type: Type-I Location: 2050-5280 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5691-6992 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6979-7962 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7973-9001 bp Gene: cd09739:cas6f Type: other Location: 9005-9568 bp CRISPR array Location: 9752-10859 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9752-10859 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 260-828 bp]: array | spacers
           [Locus range 9752-10859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRPB01000133.1 Pseudomonas aeruginosa isolate 299 genome assembly, contig: 299.NODE_229_length_121364_cov_48.159256, whole genome shotgun sequence

⇒Summary: seq-len = 121408 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262-1011 bp Zoom in on locus 1 x13 CRISPR array Location: 262-1011 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 262-1011 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 262-1011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)