CRISPRone

CRISPRone report for GCA_900146305.1_300

♦ Seq 1: FRPC01000061.1 Pseudomonas aeruginosa isolate 300 genome assembly, contig: 300.NODE_70_length_36402_cov_45.553432, whole genome shotgun sequence

⇒Summary: seq-len = 36450 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 264-10863 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 264-832 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 264-832 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1083-2057 bp Gene: COG1203:cas3 Type: Type-I Location: 2054-5284 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5695-6996 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6983-7966 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7977-9005 bp Gene: cd09739:cas6f Type: other Location: 9009-9572 bp CRISPR array Location: 9756-10863 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9756-10863 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 264-832 bp]: array | spacers
           [Locus range 9756-10863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRPC01000028.1 Pseudomonas aeruginosa isolate 300 genome assembly, contig: 300.NODE_32_length_121476_cov_47.130520, whole genome shotgun sequence

⇒Summary: seq-len = 121524 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266-1015 bp Zoom in on locus 1 x13 CRISPR array Location: 266-1015 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 266-1015 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266-1015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)