CRISPRone

CRISPRone report for GCA_900146355.1_306

♦ Seq 1: FRPH01000009.1 Pseudomonas aeruginosa isolate 306 genome assembly, contig: 306.NODE_9_length_30188_cov_38.383961, whole genome shotgun sequence

⇒Summary: seq-len = 30242 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4659 bp Zoom in on locus 1 x19 Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1-792 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 779-1762 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1773-2801 bp Gene: cd09739:cas6f Type: other Location: 2805-3368 bp CRISPR array Location: 3552-4659 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 3552-4659 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3552-4659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRPH01000113.1 Pseudomonas aeruginosa isolate 306 genome assembly, contig: 306.NODE_136_length_6203_cov_38.946800, whole genome shotgun sequence

⇒Summary: seq-len = 6257 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270-6255 bp Zoom in on locus 1 x10 CRISPR array Location: 270-838 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 270-838 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1089-2063 bp Gene: COG1203:cas3 Type: Type-I Location: 2060-5290 bp Gene: cd09735:cas8f Type: Subtype-I-F Location: 5701-6255 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270-838 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRPH01000093.1 Pseudomonas aeruginosa isolate 306 genome assembly, contig: 306.NODE_105_length_121488_cov_37.017994, whole genome shotgun sequence

⇒Summary: seq-len = 121542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120523-121271 bp Zoom in on locus 1 x13 CRISPR array Location: 120523-121271 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 120523-121271 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120523-121271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)