CRISPRone

CRISPRone report for GCA_900146695.1_341

♦ Seq 1: FRQW01001129.1 Pseudomonas aeruginosa isolate 341 genome assembly, contig: 341.NODE_1465_length_2424_cov_64.783417, whole genome shotgun sequence

⇒Summary: seq-len = 2474 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114-1282 bp Zoom in on locus 1 x20 CRISPR array Location: 114-1282 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 114-1282 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114-1282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRQW01000770.1 Pseudomonas aeruginosa isolate 341 genome assembly, contig: 341.NODE_950_length_15211_cov_62.011044, whole genome shotgun sequence

⇒Summary: seq-len = 15261 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1114-11381 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 1114-1387 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1114-1387 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 2161-4842 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4845-6413 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 6410-6940 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 6950-8092 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 8094-8756 bp Gene: pfam08798:cas6e Type: other Location: 8731-9342 bp Gene: cd09719:cas1 Type: universal Location: 9369-10259 bp Gene: pfam09707:cas2 Type: universal Location: 10256-10555 bp CRISPR array Location: 10620-11381 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 10620-11381 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1114-1387 bp]: array | spacers
           [Locus range 10620-11381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)