CRISPRone

CRISPRone report for GCA_900146765.1_348

♦ Seq 1: FRQV01000020.1 Pseudomonas aeruginosa isolate 348 genome assembly, contig: 348.NODE_26_length_210379_cov_35.316616, whole genome shotgun sequence

⇒Summary: seq-len = 210435 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163457-173901 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 163457-164565 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 163457-164565 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 164825-165799 bp Gene: COG1203:cas3 Type: Type-I Location: 165796-169026 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 169084-170388 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 170375-171358 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 171369-172397 bp Gene: cd09739:cas6f Type: other Location: 172401-172964 bp CRISPR array Location: 173214-173901 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 173214-173901 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 163457-164565 bp]: array | spacers
           [Locus range 173214-173901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)