CRISPRone

CRISPRone report for GCA_900146835.1_356

♦ Seq 1: FRRD01000070.1 Pseudomonas aeruginosa isolate 356 genome assembly, contig: 356.NODE_103_length_81184_cov_30.914810, whole genome shotgun sequence

⇒Summary: seq-len = 81244 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37490-48410 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 37490-38658 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37490-38658 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38841-39404 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39408-40436 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40447-41430 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41417-42721 bp Gene: COG1203:cas3 Type: Type-I Location: 42779-46009 bp Gene: cd09718:cas1 Type: universal Location: 46006-46980 bp CRISPR array Location: 47241-48410 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47241-48410 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37490-38658 bp]: array | spacers
           [Locus range 47241-48410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRRD01000008.1 Pseudomonas aeruginosa isolate 356 genome assembly, contig: 356.NODE_9_length_453167_cov_30.984720, whole genome shotgun sequence

⇒Summary: seq-len = 453227 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208242-218599 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 208242-208942 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 208242-208942 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 209714-212395 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 212398-213966 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 213963-214493 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 214503-215645 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 215647-216309 bp Gene: pfam08798:cas6e Type: other Location: 216284-216895 bp Gene: cd09719:cas1 Type: universal Location: 216922-217233 bp Gene: pfam09707:cas2 Type: universal Location: 217230-217529 bp CRISPR array Location: 217594-218599 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 217594-218599 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 208242-208942 bp]: array | spacers
           [Locus range 217594-218599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)