CRISPRone

CRISPRone report for GCA_900147145.1_389

♦ Seq 1: FRSJ01000188.1 Pseudomonas aeruginosa isolate 389 genome assembly, contig: 389.NODE_220_length_84824_cov_42.514713, whole genome shotgun sequence

⇒Summary: seq-len = 84878 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25566-36165 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 25566-26674 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 25566-26674 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 26857-27420 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27424-28452 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28463-29446 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29433-30734 bp Gene: COG1203:cas3 Type: Type-I Location: 31145-34375 bp Gene: cd09718:cas1 Type: universal Location: 34372-35346 bp CRISPR array Location: 35598-36165 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 35598-36165 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25566-26674 bp]: array | spacers
           [Locus range 35598-36165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRSJ01000230.1 Pseudomonas aeruginosa isolate 389 genome assembly, contig: 389.NODE_336_length_157461_cov_43.837433, whole genome shotgun sequence

⇒Summary: seq-len = 157515 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16236-16984 bp Zoom in on locus 1 x13 CRISPR array Location: 16236-16984 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 16236-16984 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16236-16984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)