CRISPRone

CRISPRone report for GCA_900147175.1_392

♦ Seq 1: FRSK01000143.1 Pseudomonas aeruginosa isolate 392 genome assembly, contig: 392.NODE_204_length_36383_cov_49.872356, whole genome shotgun sequence

⇒Summary: seq-len = 36433 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25569-36168 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 25569-26677 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 25569-26677 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 26860-27423 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27427-28455 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28466-29449 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29436-30737 bp Gene: COG1203:cas3 Type: Type-I Location: 31148-34378 bp Gene: cd09718:cas1 Type: universal Location: 34375-35349 bp CRISPR array Location: 35601-36168 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 35601-36168 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25569-26677 bp]: array | spacers
           [Locus range 35601-36168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRSK01000074.1 Pseudomonas aeruginosa isolate 392 genome assembly, contig: 392.NODE_80_length_18120_cov_47.980297, whole genome shotgun sequence

⇒Summary: seq-len = 18170 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268-1017 bp Zoom in on locus 1 x13 CRISPR array Location: 268-1017 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 268-1017 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 268-1017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)