CRISPRone

CRISPRone report for GCA_900147185.1_393

♦ Seq 1: FRSN01000018.1 Pseudomonas aeruginosa isolate 393 genome assembly, contig: 393.NODE_18_length_85449_cov_51.925205, whole genome shotgun sequence

⇒Summary: seq-len = 85501 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25581-35660 bp Zoom in on locus 1 x12 x14 CRISPR array Location: 25581-26270 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 25581-26270 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 26453-27016 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27020-28048 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28059-29042 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29029-30333 bp Gene: COG1203:cas3 Type: Type-I Location: 30391-33621 bp Gene: cd09718:cas1 Type: universal Location: 33618-34592 bp CRISPR array Location: 34853-35660 bp Num of repeats: 14 Spacers: s12-s24 CRISPR array Location: 34853-35660 bp Num of repeats: 14 Spacers: s12-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25581-26270 bp]: array | spacers
           [Locus range 34853-35660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRSN01000032.1 Pseudomonas aeruginosa isolate 393 genome assembly, contig: 393.NODE_32_length_97397_cov_57.270256, whole genome shotgun sequence

⇒Summary: seq-len = 97449 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62287-82727 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 62287-63162 bp Gene: pfam13280:WYL Type: other Location: 69506-70498 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 79345-80631 bp Gene: unk Type: unknown Location: 80700-81332 bp Gene: unk Type: unknown Location: 81488-81778 bp Gene: pfam13280:WYL Type: other Location: 81843-82727 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRSN01000155.1 Pseudomonas aeruginosa isolate 393 genome assembly, contig: 393.NODE_189_length_209817_cov_52.288013, whole genome shotgun sequence

⇒Summary: seq-len = 209869 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192479-193887 bp Zoom in on locus 1 x24 CRISPR array Location: 192479-193887 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 192479-193887 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192479-193887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)