CRISPRone

CRISPRone report for GCA_900147225.1_396

♦ Seq 1: FRSP01000060.1 Pseudomonas aeruginosa isolate 396 genome assembly, contig: 396.NODE_66_length_97402_cov_55.932167, whole genome shotgun sequence

⇒Summary: seq-len = 97452 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14725-35165 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 14725-15609 bp Gene: unk Type: unknown Location: 15674-15964 bp Gene: unk Type: unknown Location: 16120-16752 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 16785-18107 bp Gene: pfam13280:WYL Type: other Location: 26954-27946 bp Gene: pfam13280:WYL Type: other Location: 34290-35165 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRSP01000015.1 Pseudomonas aeruginosa isolate 396 genome assembly, contig: 396.NODE_16_length_109469_cov_53.686981, whole genome shotgun sequence

⇒Summary: seq-len = 109519 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73854-83933 bp Zoom in on locus 1 x14 x12 CRISPR array Location: 73854-74662 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 73854-74662 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 74922-75896 bp Gene: COG1203:cas3 Type: Type-I Location: 75893-79123 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 79181-80485 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 80472-81455 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 81466-82494 bp Gene: cd09739:cas6f Type: other Location: 82498-83061 bp CRISPR array Location: 83245-83933 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 83245-83933 bp Num of repeats: 12 Spacers: s14-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 73854-74662 bp]: array | spacers
           [Locus range 83245-83933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRSP01000104.1 Pseudomonas aeruginosa isolate 396 genome assembly, contig: 396.NODE_131_length_231152_cov_54.348835, whole genome shotgun sequence

⇒Summary: seq-len = 231202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16901-18308 bp Zoom in on locus 1 x24 CRISPR array Location: 16901-18308 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 16901-18308 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16901-18308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)