CRISPRone

CRISPRone report for GCA_900147245.1_398

♦ Seq 1: FRSQ01000213.1 Pseudomonas aeruginosa isolate 398 genome assembly, contig: 398.NODE_295_length_17201_cov_52.611012, whole genome shotgun sequence

⇒Summary: seq-len = 17243 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 260-1009 bp Zoom in on locus 1 x13 CRISPR array Location: 260-1009 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 260-1009 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 260-1009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRSQ01000018.1 Pseudomonas aeruginosa isolate 398 genome assembly, contig: 398.NODE_19_length_36380_cov_52.522568, whole genome shotgun sequence

⇒Summary: seq-len = 36422 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 258-10857 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 258-826 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 258-826 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1077-2051 bp Gene: COG1203:cas3 Type: Type-I Location: 2048-5278 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5689-6990 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6977-7960 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7971-8999 bp Gene: cd09739:cas6f Type: other Location: 9003-9566 bp CRISPR array Location: 9750-10857 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9750-10857 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 258-826 bp]: array | spacers
           [Locus range 9750-10857 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)