CRISPRone

CRISPRone report for GCA_900147275.1_401

♦ Seq 1: FRSV01000148.1 Pseudomonas aeruginosa isolate 401 genome assembly, contig: 401.NODE_173_length_37527_cov_46.415222, whole genome shotgun sequence

⇒Summary: seq-len = 37573 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18767-29339 bp Zoom in on locus 1 x14 x9 CRISPR array Location: 18767-19589 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 18767-19589 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 19654-19953 bp Gene: cd09719:cas1 Type: universal Location: 19950-20840 bp Gene: pfam08798:cas6e Type: other Location: 20867-21406 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 21453-22115 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 22117-23259 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 23269-23799 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 23796-25364 bp Gene: cd09641:cas3HD Type: Type-I Location: 25367-28048 bp CRISPR array Location: 28822-29339 bp Num of repeats: 9 Spacers: s14-s21 CRISPR array Location: 28822-29339 bp Num of repeats: 9 Spacers: s14-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18767-19589 bp]: array | spacers
           [Locus range 28822-29339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)