CRISPRone

CRISPRone report for GCA_900147305.1_404

♦ Seq 1: FRSY01000275.1 Pseudomonas aeruginosa isolate 404 genome assembly, contig: 404.NODE_466_length_20101_cov_54.875328, whole genome shotgun sequence

⇒Summary: seq-len = 20143 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1242-11827 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1242-2111 bp Gene: pfam00078:RT Type: other Location: 7020-8288 bp Gene: unk Type: unknown Location: 8438-8836 bp Gene: unk Type: unknown Location: 9020-9199 bp Gene: cls000170:cas4 Type: Type-I Location: 10283-11827 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRSY01000179.1 Pseudomonas aeruginosa isolate 404 genome assembly, contig: 404.NODE_230_length_30995_cov_53.488014, whole genome shotgun sequence

⇒Summary: seq-len = 31037 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12143-22715 bp Zoom in on locus 1 x14 x9 CRISPR array Location: 12143-12965 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 12143-12965 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 13030-13329 bp Gene: cd09719:cas1 Type: universal Location: 13326-14216 bp Gene: pfam08798:cas6e Type: other Location: 14243-14782 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 14829-15491 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15493-16635 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 16645-17175 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 17172-18740 bp Gene: cd09641:cas3HD Type: Type-I Location: 18743-21424 bp CRISPR array Location: 22198-22715 bp Num of repeats: 9 Spacers: s14-s21 CRISPR array Location: 22198-22715 bp Num of repeats: 9 Spacers: s14-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12143-12965 bp]: array | spacers
           [Locus range 22198-22715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)