CRISPRone

CRISPRone report for GCA_900147445.1_419

♦ Seq 1: FRTK01000153.1 Pseudomonas aeruginosa isolate 419 genome assembly, contig: 419.NODE_163_length_86892_cov_42.381508, whole genome shotgun sequence

⇒Summary: seq-len = 86938 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25862-36415 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 25862-26725 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25862-26725 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 26908-27471 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27475-28503 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28514-29497 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29484-30788 bp Gene: COG1203:cas3 Type: Type-I Location: 30846-34076 bp Gene: cd09718:cas1 Type: universal Location: 34073-35047 bp CRISPR array Location: 35309-36415 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 35309-36415 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25862-26725 bp]: array | spacers
           [Locus range 35309-36415 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTK01000043.1 Pseudomonas aeruginosa isolate 419 genome assembly, contig: 419.NODE_44_length_38066_cov_44.254295, whole genome shotgun sequence

⇒Summary: seq-len = 38112 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8283-19280 bp Zoom in on locus 1 x12 x18 CRISPR array Location: 8283-8983 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8283-8983 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9755-12436 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12439-14007 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14004-14534 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14544-15686 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15688-16350 bp Gene: pfam08798:cas6e Type: other Location: 16397-16936 bp Gene: cd09719:cas1 Type: universal Location: 16963-17853 bp Gene: pfam09707:cas2 Type: universal Location: 17850-18149 bp CRISPR array Location: 18214-19280 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 18214-19280 bp Num of repeats: 18 Spacers: s12-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8283-8983 bp]: array | spacers
           [Locus range 18214-19280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)