CRISPRone

CRISPRone report for GCA_900147455.1_418

♦ Seq 1: FRTL01000162.1 Pseudomonas aeruginosa isolate 418 genome assembly, contig: 418.NODE_245_length_34986_cov_34.456383, whole genome shotgun sequence

⇒Summary: seq-len = 35040 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16683-18150 bp Zoom in on locus 1 x25 CRISPR array Location: 16683-18150 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 16683-18150 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16683-18150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTL01000146.1 Pseudomonas aeruginosa isolate 418 genome assembly, contig: 418.NODE_180_length_726_cov_32.265839, whole genome shotgun sequence

⇒Summary: seq-len = 780 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104-731 bp Zoom in on locus 1 x11 CRISPR array Location: 104-731 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 104-731 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104-731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRTL01000073.1 Pseudomonas aeruginosa isolate 418 genome assembly, contig: 418.NODE_79_length_43284_cov_30.868174, whole genome shotgun sequence

⇒Summary: seq-len = 43338 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102-8982 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 102-250 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102-250 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 511-1485 bp Gene: COG1203:cas3 Type: Type-I Location: 1482-4712 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4770-6074 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6061-7044 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7055-8083 bp Gene: cd09739:cas6f Type: other Location: 8087-8650 bp CRISPR array Location: 8835-8982 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 8835-8982 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 102-250 bp]: array | spacers
           [Locus range 8835-8982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)