CRISPRone

CRISPRone report for GCA_900147465.1_420

♦ Seq 1: FRTN01000022.1 Pseudomonas aeruginosa isolate 420 genome assembly, contig: 420.NODE_23_length_47074_cov_35.888153, whole genome shotgun sequence

⇒Summary: seq-len = 47120 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27750-38746 bp Zoom in on locus 1 x18 x12 CRISPR array Location: 27750-28815 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 27750-28815 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 28880-29179 bp Gene: cd09719:cas1 Type: universal Location: 29176-30066 bp Gene: pfam08798:cas6e Type: other Location: 30093-30632 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 30679-31341 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 31343-32485 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 32495-33025 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 33022-34590 bp Gene: cd09641:cas3HD Type: Type-I Location: 34593-37274 bp CRISPR array Location: 38047-38746 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 38047-38746 bp Num of repeats: 12 Spacers: s18-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27750-28815 bp]: array | spacers
           [Locus range 38047-38746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTN01000122.1 Pseudomonas aeruginosa isolate 420 genome assembly, contig: 420.NODE_132_length_66797_cov_33.031380, whole genome shotgun sequence

⇒Summary: seq-len = 66843 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34758-45311 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 34758-35621 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 34758-35621 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 35804-36367 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36371-37399 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37410-38393 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38380-39684 bp Gene: COG1203:cas3 Type: Type-I Location: 39742-42123 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 42193-42972 bp Gene: cd09718:cas1 Type: universal Location: 42969-43943 bp CRISPR array Location: 44205-45311 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 44205-45311 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34758-35621 bp]: array | spacers
           [Locus range 44205-45311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)