CRISPRone

CRISPRone report for GCA_900147475.1_421

♦ Seq 1: FRTP01000145.1 Pseudomonas aeruginosa isolate 421 genome assembly, contig: 421.NODE_157_length_42033_cov_37.023243, whole genome shotgun sequence

⇒Summary: seq-len = 42081 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25845-36398 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 25845-26708 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25845-26708 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 26891-27454 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27458-28486 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28497-29480 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29467-30771 bp Gene: COG1203:cas3 Type: Type-I Location: 30829-34059 bp Gene: cd09718:cas1 Type: universal Location: 34056-35030 bp CRISPR array Location: 35292-36398 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 35292-36398 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25845-26708 bp]: array | spacers
           [Locus range 35292-36398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTP01000119.1 Pseudomonas aeruginosa isolate 421 genome assembly, contig: 421.NODE_129_length_38040_cov_40.628075, whole genome shotgun sequence

⇒Summary: seq-len = 38088 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8287-19284 bp Zoom in on locus 1 x12 x18 CRISPR array Location: 8287-8987 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8287-8987 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9759-12440 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12443-14011 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14008-14538 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14548-15690 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15692-16354 bp Gene: pfam08798:cas6e Type: other Location: 16401-16940 bp Gene: cd09719:cas1 Type: universal Location: 16967-17857 bp Gene: pfam09707:cas2 Type: universal Location: 17854-18153 bp CRISPR array Location: 18218-19284 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 18218-19284 bp Num of repeats: 18 Spacers: s12-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8287-8987 bp]: array | spacers
           [Locus range 18218-19284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)