CRISPRone

CRISPRone report for GCA_900147485.1_422

♦ Seq 1: FRTQ01000030.1 Pseudomonas aeruginosa isolate 422 genome assembly, contig: 422.NODE_33_length_230286_cov_81.216751, whole genome shotgun sequence

⇒Summary: seq-len = 230330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212900-214427 bp Zoom in on locus 1 x26 CRISPR array Location: 212900-214427 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 212900-214427 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 212900-214427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTQ01000149.1 Pseudomonas aeruginosa isolate 422 genome assembly, contig: 422.NODE_184_length_1016_cov_87.852364, whole genome shotgun sequence

⇒Summary: seq-len = 1060 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94-1021 bp Zoom in on locus 1 x16 CRISPR array Location: 94-1021 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 94-1021 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94-1021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRTQ01000085.1 Pseudomonas aeruginosa isolate 422 genome assembly, contig: 422.NODE_94_length_43664_cov_73.610802, whole genome shotgun sequence

⇒Summary: seq-len = 43708 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92-8972 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 92-240 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 92-240 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 501-1475 bp Gene: COG1203:cas3 Type: Type-I Location: 1472-4702 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4760-6064 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6051-7034 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7045-8073 bp Gene: cd09739:cas6f Type: other Location: 8077-8640 bp CRISPR array Location: 8825-8972 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 8825-8972 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 92-240 bp]: array | spacers
           [Locus range 8825-8972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)